PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G238700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 301aa    MW: 33456.9 Da    PI: 8.2862
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G238700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.14.8e-4261483128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........kvkaeekewyfFskrdkkyatgk.....rknra 77 
                         pGfrFhPt+eel+ +yLk+ ++g+kl++ ++i++v++y+++PwdLp+           + + +++ewyfF++rd   + ++     r++r+
  Brast07G238700.1.p   6 PGFRFHPTEEELLEFYLKQAAHGRKLKF-DIIPTVHLYRHDPWDLPAlagdiiqhgssSSSCSSREWYFFVPRDGGRRLNQqqaacRPSRT 95 
                         9**************************9.99***************6689988776543333778*******99655522223455999** PP

                 NAM  78 tksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         t++g+Wkatg+d++v +    ++l+glkktLv+y+grap+g+ktdWvm+eyrl
  Brast07G238700.1.p  96 TERGFWKATGSDRAVRCGadPKRLIGLKKTLVYYQGRAPRGSKTDWVMNEYRL 148
                         ****************97666778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100548.4584178IPR003441NAC domain
SuperFamilySSF1019413.53E-455178IPR003441NAC domain
PfamPF023651.0E-236148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MELELPGFRF HPTEEELLEF YLKQAAHGRK LKFDIIPTVH LYRHDPWDLP ALAGDIIQHG  60
SSSSSCSSRE WYFFVPRDGG RRLNQQQAAC RPSRTTERGF WKATGSDRAV RCGADPKRLI  120
GLKKTLVYYQ GRAPRGSKTD WVMNEYRLPE HQGAMARGGG GKLQQDHQEL VLCKVYRKAV  180
SLKELEQRVA MEELARSSSA ASSHCTGSPD ATGSMSSDVV QYEAAHHGGA GVGVKIEEAA  240
AAAVARPAAM KLPELETTRP EWMSQPQQDP FLLASSQLRS PWMMESFCLS PCYQSSLLNF  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-40217812168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9676332e-53EU967633.1 Zea mays clone 304978 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752297.11e-176PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLI1GV811e-176I1GV81_BRADI; Uncharacterized protein
STRINGBRADI1G29857.11e-175(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.13e-66NAC domain containing protein 36